Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs7127156 | chr11:133839857 | T/C | 7.76E-5 | 488 | 16.07 | 15.9 | 8.73 | KM Plot |
| THCA | rs7129491 | chr11:57095082 | C/G | 2.13E-11 | 490 | 16.37 | 14.45 | 20.77 | KM Plot |
| THCA | rs7131094 | chr11:112044917 | C/T | 3.71E-5 | 486 | 15.97 | 16.27 | 12.37 | KM Plot |
| THCA | rs7131126 | chr11:62593595 | G/A | 7.97E-5 | 489 | 16.22 | 14.17 | 14.27 | KM Plot |
| THCA | rs71322718 | chr22:25464976 | GTC/G | 2.57E-5 | 482 | 15.7 | 17.03 | 7.48 | KM Plot |
| THCA | rs71325939 | chr9:15851436 | G/GC | 1.81E-5 | 487 | 6.22 | 16.02 | 15.67 | KM Plot |
| THCA | rs71325942 | chr9:15862177 | T/TA | 0.000159 | 487 | 8.95 | 16.63 | 15.5 | KM Plot |
| THCA | rs71329907 | chr21:24637656 | C/T | 2.99E-6 | 488 | 15.33 | 18.77 | 13.83 | KM Plot |
| THCA | rs7135644 | chr12:109475988 | G/A | 7.21E-5 | 482 | 15.97 | 15.23 | 12.1 | KM Plot |
| THCA | rs7137083 | chr12:109493896 | A/G | 3.14E-6 | 490 | 6.17 | 16.23 | 15.87 | KM Plot |
| THCA | rs71372891 | chr17:57481768 | C/A | 2.31E-6 | 477 | 16.2 | 14.95 | 17.62 | KM Plot |
| THCA | rs71374488 | chr16:20703074 | T/C | 4.15E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs71374818 | chr16:20610402 | G/A | 4.24E-6 | 483 | 15.77 | 17.73 | 14.43 | KM Plot |
| THCA | rs71374820 | chr16:20621863 | C/T | 4.12E-6 | 485 | 15.9 | 17.47 | 14.27 | KM Plot |
| THCA | rs71374821 | chr16:20623437 | C/T | 3.55E-6 | 487 | 15.93 | 17.55 | 14.27 | KM Plot |